PairwiseAlignmentVisualizer

Variables

var.total_intensity
var.scan_acquisition_time
var.pairwise_distance_matrix
var.pairwise_distance_alignment_names

var.anchors.retention_index_names
var.anchors.retention_scans

Configurable Properties

Name: chromheight
Default Value: 100
Description:
Height in pixels of the plotted chromatogram profiles.

Name: createComparativeTICChart
Default Value: true
Description:
If true, create a comparative pairwise chart for alignments.

Name: createDifferentialTICChart
Default Value: true
Description:
If true, create a differential intensity chart of aligned chromatograms.

Name: createMapTICChart
Default Value: true
Description:
If true, create a pairwise chart showing the alignment map.

Name: createRatioTICChart
Default Value: true
Description:
If true, create a ratio intenstiy chart of aligned chromatograms.

Name: createSuperimposedTICChart
Default Value: true
Description:
If true, create a superimposed chart of aligned chromatograms.

Name: mapheight
Default Value: 100
Description:
Height in pixels of the pairwise alignment map.

Name: normalize
Default Value: false
Description:
Deprecated

Name: normalize_global
Default Value: false
Description:
Deprecated

Name: pairsWithFirstElement
Default Value: false
Description:
If true, plot pairs with first element only

Name: showChromatogramHeatmap
Default Value: false
Description:
Deprecated

Name: substract_start_time
Default Value: true
Description:
If true, subtract chromatogram start times.

Name: timeUnit
Default Value: min
Description:
The time unit used for plotting.

Name: y_axis_label
Default Value: TIC
Description:
The y axis label on the plots.