PairwiseAlignmentMatrixVisualizer

Variables

var.total_intensity
var.pairwise_distance_matrix
var.pairwise_distance_alignment_names

var.anchors.retention_index_names
var.anchors.retention_scans

Configurable Properties

Name: chromatogramHeight
Default Value: 200
Description:
The height of the chromatogram profile in pixels.

Name: colorramp_location
Default Value: res/colorRamps/bw.csv
Description:
The location of the color ramp used for plotting.

Name: drawPath
Default Value: true
Description:
If true, plot the alignment path.

Name: fontsize
Default Value: 30
Description:
The font size used for labels in pt.

Name: format
Default Value: png
Description:
The file format to save plots in.

Name: full_spec
Default Value: false
Description:
Deprecated

Name: left_chromatogram_var
Default Value: total_intensity
Description:

Name: matrix_vars
Default Value: [cumulative_distance, pairwise_distance]
Description:
A list of matrix variables to plot

Name: pairsWithFirstElement
Default Value: false
Description:
If true, plot only pairs with first chromatogram.

Name: path_i
Default Value: null
Description:

Name: path_j
Default Value: null
Description:

Name: sampleSize
Default Value: 1024
Description:
The number of color samples used in plots.

Name: top_chromatogram_var
Default Value: total_intensity
Description: