TICPeakFinder

Variables

var.total_intensity

var.scan_acquisition_time

var.tic_peaks
var.tic_filtered
var.peak_name
var.peak_retention_time
var.peak_start_time
var.peak_end_time
var.peak_area
var.baseline_start_time
var.baseline_stop_time
var.baseline_start_value
var.baseline_stop_value

Configurable Properties

Name: baselineEstimator
Default Value: LoessMinimaBaselineEstimator(bandwidth=0.3, accuracy=1.0E-12, robustnessIterations=2, minimaWindow=100)
Description:
The baseline estimator to use.

Name: filter
Default Value: [MultiplicationFilter(factor=1.0)]
Description:
The filters to use for smoothing and filtering of the tic.

Name: integratePeaks
Default Value: false
Description:
If true, peak areas will be integrated.

Name: integrateRawTic
Default Value: true
Description:
If true, the raw tic will be used for integration. If false, the smoothed and filtered tic will be used.

Name: integrateTICPeaks
Default Value: true
Description:
If true, the tic will be used to integrate peaks.

Name: peakNormalizers
Default Value: []
Description:
A list of peak normalizers. Each normalizer is invoked and its result multiplied to the intermediate result with the original peak’s area.

Name: peakSeparationWindow
Default Value: 10
Description:
The minimum number of scans between two peak apices.The second peak will be omitted, if it is closer to the first peak than allowed by the parameter.

Name: peakThreshold
Default Value: 0.01
Description:
The minimal local signal-to-noise threshold required for a peak to be reported.

Name: removeOverlappingPeaks
Default Value: true
Description:
The removal of overlapping peaks is currently unavailable.

Name: saveGraphics
Default Value: false
Description:
If true, a plot of the local estimated signal-to-noise and of peak locations will be created.

Name: snrWindow
Default Value: 50
Description:
Width of the sliding window for local snr estimation.

Name: subtractBaseline
Default Value: false
Description:
If true, the estimated baseline is subtracted from the smoothed and filtered tic.

Name: ticFilteredVarName
Default Value: tic_filtered
Description:

Name: ticPeakVarName
Default Value: tic_peaks
Description: