Class: maltcms.commands.fragments2d.peakfinding.cwt.CwtPeakFinder
Workflow Slot: PEAKFINDING
Description: Finds peak locations in intensity profiles using the continuous wavelet transform.


Variables

Required

var.modulation_time
var.scan_rate

Optional

Provided

var.peak_index_list

Configurable Properties

Name: maxNeighbors
Default Value: 15
Description:
The maxmimum number of neighbors expected in the given radius.


Name: maxRidges
Default Value: 5000
Description:
The maximum number of ridges to report. Actual number of ridges reported may be lower, depending on the other parameters.


Name: maxScale
Default Value: 20
Description:
The maximum scale to calculate the Continuous Wavelet Transform for.


Name: minPercentile
Default Value: 95
Description:
Percentile of the intensity value distribution to use as minimum intensity for peaks.


Name: minScale
Default Value: 5
Description:
The minimum required scale for a ridge.


Name: radius
Default Value: 10.0d
Description:
The maximum radius around a peak to search for neighboring peaks.


Name: saveQuadTreeImage
Default Value: false
Description:
If true, the quad tree image will be saved.


Name: saveRidgeOverlayImages
Default Value: false
Description:
If true, the 2D TIC ridge overlay images will be saved, before and after filtering.


Name: saveScaleogramImage
Default Value: false
Description:
If true, the scaleogram image will be saved.


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