CenterStarAlignment

Class: maltcms.commands.fragments.alignment.CenterStarAlignment
Workflow Slot: ALIGNMENT
Description: Creates a multiple alignment by selecting a reference chromatogram based on highest overall similarity or lowest overall distance of reference to other chromatograms.

Variables

Required

var.minimizing_array_comp
var.pairwise_distance_matrix
var.pairwise_distance_names

Optional

Provided

var.multiple_alignment
var.multiple_alignment_names
var.multiple_alignment_type
var.multiple_alignment_creator

Configurable Properties

Name: alignToFirst
Default Value: false
Description:
If true, align all chromatograms to the first one. If false, select reference automatically from pairwise similarities provided by upstream command.

Name: centerSequence
Default Value: ``
Description:
Base name (without file extension) of the chromatogram to use as the center to align to. Overrides automatic selection.