Project Modules

This project has declared the following modules:

Name	Description
Maltcms Test Tools	Test utilities and datasets.
Maltcms Apps	The Maltcms CLI Application.
Maltcms ChromA	Algorithms and Commands mainly for 1D Chromatography.
Maltcms ChromA4D	Algorithms and Commands mainly for 2D Chromatography.
Maltcms ChromA4D CWT	Continuous Wavelet Transform based Peakfinding for 2D Chromatography.
Maltcms ChromA4D SRG	Seeded MS-based Region Growing for Peak Integration in 2D Chromatography.
Maltcms Filters	Implementations of Filters for Array Data.
Maltcms Commands	Similarities for Feature Vectors and Time Series thereof, such as Cosine and Dynamic Time Warping.
Maltcms Datastructures	Datastructures for Chromatography and Mass Spectrometry.
Maltcms QuadTree	Generic 2D Spatial Index Datastructure mainly for 2D Chromatography.
Maltcms Execution	(Deprecated) Local Execution of Maltcms.
Maltcms IO	IO Utilities for CSV and Color Ramps.
Maltcms UI	Utilities for Charting and Plotting.
Maltcms DB	Utilities for Metabolite DB Creation and Search/Identification.
Maltcms Experimental	(Experimental) Implementations, Testbed for new Developments.
Maltcms Statistics	(Experimental) Implementation of Log-Delta Evaluation for Metabolite Abundances.
Maltcms Symbolic Rep Alignment	(Deprecated) Implementation of Sub-Sampled 1D Time Series Alignment.
Maltcms Xml Alignment Format	Maltcms XML Alignment Format Schema and Implementation.
Maltcms Xml Annotation Format	Maltcms XML Feature Format Schema and Implementation.
Maltcms Runtime Resources	Required Resources for the Maltcms Application.
Maltcms Evaluation	Utilities for Comparison of Multiple Peak Alignments.
Maltcms Controlled Vocabulary	Controlled Vocabulary Term Resolution for Variable Names.
Maltcms Analytical Pyrolysis	User Interface and Implementation for Analytical Pyrolysis Workflows.
Maltcms Microbenchmarks	Testing Module for Performance Evaluation of Similarity Functions.
Maltcms Distributions	Maltcms, short for "Modular Application Toolkit for Chromatography Mass-Spectrometry" is an application framework mainly suited for developers working in the domain of bioinformatics for metabolomics and proteomics. Its aim is to provide reusable, efficient datastructures, abstracting from the various low-level data-formats like netcdf (ANDIMS), mzXML, mzData and mzML and providing consistent access to data features like mass spectra, chromatograms and metadata. Furthermore, Maltcms provides a platform for the implementation and execution of processing pipelines. New and existing algorithms can be easily implemented or included and executed together with existing processing elements.
Maltcms OSGI Library Wrappers	Maltcms, short for "Modular Application Toolkit for Chromatography Mass-Spectrometry" is an application framework mainly suited for developers working in the domain of bioinformatics for metabolomics and proteomics. Its aim is to provide reusable, efficient datastructures, abstracting from the various low-level data-formats like netcdf (ANDIMS), mzXML, mzData and mzML and providing consistent access to data features like mass spectra, chromatograms and metadata. Furthermore, Maltcms provides a platform for the implementation and execution of processing pipelines. New and existing algorithms can be easily implemented or included and executed together with existing processing elements.
Maltcms IO Providers	Maltcms, short for "Modular Application Toolkit for Chromatography Mass-Spectrometry" is an application framework mainly suited for developers working in the domain of bioinformatics for metabolomics and proteomics. Its aim is to provide reusable, efficient datastructures, abstracting from the various low-level data-formats like netcdf (ANDIMS), mzXML, mzData and mzML and providing consistent access to data features like mass spectra, chromatograms and metadata. Furthermore, Maltcms provides a platform for the implementation and execution of processing pipelines. New and existing algorithms can be easily implemented or included and executed together with existing processing elements.